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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12757415_12758665_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12757415 - 12758665
Intron Length:
1251

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTT|GTAAGTACT
5'SS Class:
major
3'SS Sequence:
CATTTTCTTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TCATTTTGAAAA
Flanking Amino Acid:
EELEALETDVSNGWDPNDMF
Intron Amino Acid Position:
156

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.67
1
79.2
33.9
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
83.1
0.74
0.7
81.5
30.1
Minor 5ss
40.9
-1
2.8
58.9
39.3
Minor BPS
53
0.09
1.5
61.74
38.3

Associated Gene:

Gene:
ATXN2
Ensembl Gene ID:
ENSAPLG00000008724
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009136
12725146 - 12768535
43390