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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12758791_12765869_R

Intron Information:

Intron Rank:
4
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
12758791 - 12765869
Intron Length:
7079

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATACTTT
5'SS Class:
weak_major
3'SS Sequence:
CGCTCCCTTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAC
U12 Branch Point Sequence:
TCGATTTCACCC
Flanking Amino Acid:
KDMDTNYARRDAFTDSAISA
Intron Amino Acid Position:
114

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.9
0.59
1
73.8
37.5
Major BPS
81.3
0.78
0.8
83.4
26.1
Major PPT
71.9
0.49
0.8
65.5
30.4
Minor 5ss
68.3
0.62
2.4
81.8
38.5
Minor BPS
44.1
-0.4
1.7
50.01
41.2

Associated Gene:

Gene:
ATXN2
Ensembl Gene ID:
ENSAPLG00000008724
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009136
12725146 - 12768535
43390