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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12766325_12767003_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12766325 - 12767003
Intron Length:
679

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTT|GTAAGTCTT
5'SS Class:
major
3'SS Sequence:
TCTTGCATTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
CTTTCTTGCATT
Flanking Amino Acid:
RMVHILTSVVGSKCEVQVKN
Intron Amino Acid Position:
40

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.4
0.65
1.1
76.5
38.6
Major BPS
100
1.24
0.5
100
0
Major PPT
75.4
0.57
0.9
66.8
39.3
Minor 5ss
42.7
-0.8
3.1
65.3
39.9
Minor BPS
54.1
0.21
1.9
76.06
41.4

Associated Gene:

Gene:
ATXN2
Ensembl Gene ID:
ENSAPLG00000008724
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009136
12725146 - 12768535
43390