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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12767064_12768478_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12767064 - 12768478
Intron Length:
1415

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTTTATCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TCATTTTTATCT
Flanking Amino Acid:
SSGKGPPQPTISFDGIYANM
Intron Amino Acid Position:
20

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.9
87.3
29
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
91.2
0.93
0.7
89.2
27.3
Minor 5ss
36.7
-1.5
3
52.2
44.4
Minor BPS
62.4
0.47
1.6
75.72
41.5

Associated Gene:

Gene:
ATXN2
Ensembl Gene ID:
ENSAPLG00000008724
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009136
12725146 - 12768535
43390