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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12789682_12790700_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12789682 - 12790700
Intron Length:
1019

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTGGGTACC
5'SS Class:
major
3'SS Sequence:
TTCTATTTGCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATACAC
U12 Branch Point Sequence:
TCTTCCTGACCT
Flanking Amino Acid:
LLKEKQSVERKCSQLNNKVA
Intron Amino Acid Position:
438

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.2
0.52
1
68.6
36.4
Major BPS
56.2
0.16
1
64.7
31
Major PPT
66.6
0.37
1.2
67.4
42.6
Minor 5ss
31.9
-2.1
2.9
37.5
33.5
Minor BPS
67.2
0.62
1.8
84.75
41.8

Associated Gene:

Gene:
BRAP
Ensembl Gene ID:
ENSAPLG00000008647
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009033
12789321 - 12801686
12366