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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12792783_12794470_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12792783 - 12794470
Intron Length:
1688

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAATATT
5'SS Class:
strong_major
3'SS Sequence:
TCTGTGTTTGTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTAGGAA
U12 Branch Point Sequence:
TCTGCACACACT
Flanking Amino Acid:
EEKIDALQLEYSYLLTSQLE
Intron Amino Acid Position:
374

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.96
0.8
93.3
21.1
Major BPS
50.5
0.01
1.4
51.7
43.9
Major PPT
78.1
0.63
0.9
72.9
37.4
Minor 5ss
41
-1
3
59.7
44.8
Minor BPS
38.7
-0.8
2.5
61.18
48.2

Associated Gene:

Gene:
BRAP
Ensembl Gene ID:
ENSAPLG00000008647
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009033
12789321 - 12801686
12366