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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12795219_12795828_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12795219 - 12795828
Intron Length:
610

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTAGG
5'SS Class:
strong_major
3'SS Sequence:
GTTCTCTCGGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTGAG
U12 Branch Point Sequence:
ATTGTGAGGACA
Flanking Amino Acid:
NKCFECGVQENLWICLICGH
Intron Amino Acid Position:
291

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
0.9
75.5
40.6
Major BPS
57.3
0.18
1.7
57.1
49.4
Major PPT
73.4
0.53
1
69.7
36.7
Minor 5ss
36.8
-1.5
2.7
42.8
38.2
Minor BPS
38.7
-0.9
2.3
53.53
38.7

Associated Gene:

Gene:
BRAP
Ensembl Gene ID:
ENSAPLG00000008647
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009033
12789321 - 12801686
12366