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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12795905_12797923_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12795905 - 12797923
Intron Length:
2019

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAC|GTAAGAGGC
5'SS Class:
major
3'SS Sequence:
TGTTGCCCTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATCAT
U12 Branch Point Sequence:
GTGTGTCTAATC
Flanking Amino Acid:
SQCLQRWEDTTCPVCRYCQT
Intron Amino Acid Position:
265

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.6
0.53
1.3
64.2
40.9
Major BPS
80.4
0.76
1
80.3
31.8
Major PPT
72.7
0.51
0.9
63.3
39.5
Minor 5ss
32.2
-2
3.4
41
38.9
Minor BPS
47.2
-0.2
2
59.21
40.5

Associated Gene:

Gene:
BRAP
Ensembl Gene ID:
ENSAPLG00000008647
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009033
12789321 - 12801686
12366