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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12798073_12798547_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12798073 - 12798547
Intron Length:
475

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TGTTCTTTCGAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTGAG
U12 Branch Point Sequence:
GTTCTTTCGAAG
Flanking Amino Acid:
ERAEVFKSEDGASLPVMDLT
Intron Amino Acid Position:
216

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.9
89.9
23.2
Major BPS
52.2
0.06
1.6
51.1
46.3
Major PPT
73.2
0.52
1
75
33.6
Minor 5ss
48.6
-0.1
2.8
71.8
38.1
Minor BPS
44.6
-0.5
1.6
49.59
38

Associated Gene:

Gene:
BRAP
Ensembl Gene ID:
ENSAPLG00000008647
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009033
12789321 - 12801686
12366