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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12798662_12799839_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12798662 - 12799839
Intron Length:
1178

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAGCT
5'SS Class:
strong_major
3'SS Sequence:
CTTGTGTGCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
CTCTTTTTAACG
Flanking Amino Acid:
YMVLIKFSSQADADSFYMAC
Intron Amino Acid Position:
178

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.6
0.98
0.8
81.6
30
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
69.6
0.44
1
63.8
41.7
Minor 5ss
33.1
-1.9
3.4
48.3
47.4
Minor BPS
68.2
0.43
1.4
65.89
42.8

Associated Gene:

Gene:
BRAP
Ensembl Gene ID:
ENSAPLG00000008647
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009033
12789321 - 12801686
12366