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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12800030_12800767_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12800030 - 12800767
Intron Length:
738

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGGATG
5'SS Class:
strong_major
3'SS Sequence:
GTTCCCTTCGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTGTAAC
U12 Branch Point Sequence:
GGCCGTGTAACC
Flanking Amino Acid:
VHGIMHLYKTNKMTSLKEDV
Intron Amino Acid Position:
114

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81
0.73
1
76.2
39.3
Major BPS
56.8
0.17
1.4
61.4
43.2
Major PPT
78.6
0.64
0.8
72.8
31.9
Minor 5ss
37.6
-1.4
3.3
49
41.4
Minor BPS
41.6
-0.6
2.2
48.73
41.4

Associated Gene:

Gene:
BRAP
Ensembl Gene ID:
ENSAPLG00000008647
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009033
12789321 - 12801686
12366