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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12800970_12801547_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
12800970 - 12801547
Intron Length:
578

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGGAGG
5'SS Class:
major
3'SS Sequence:
TGGTTTGTAAAAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TAGTAAT
U12 Branch Point Sequence:
TGGTTTGTAAAA
Flanking Amino Acid:
VIIETIRPRADEPKGAVEGR
Intron Amino Acid Position:
47

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1
64.5
46.9
Major BPS
76.6
0.66
1.1
75.9
36.3
Major PPT
58.8
0.2
1.2
60.3
44.1
Minor 5ss
30.6
-2.2
3.3
39.8
45.8
Minor BPS
47.7
-0.1
2
60.33
40

Associated Gene:

Gene:
BRAP
Ensembl Gene ID:
ENSAPLG00000008647
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009033
12789321 - 12801686
12366