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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12805434_12806020_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12805434 - 12806020
Intron Length:
587

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACAAAGC
5'SS Class:
major
3'SS Sequence:
CTCCTGCTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TATCTTCTAACT
Flanking Amino Acid:
AAQLGIKTVKVDDLEVALKE
Intron Amino Acid Position:
230

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.7
0.51
1.1
63.4
41.4
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
78.6
0.64
0.8
72.2
32.4
Minor 5ss
32.1
-2
3.2
43.8
43.5
Minor BPS
60.6
0.41
1.6
79.1
36.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008641
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008980
12802995 - 12811412
8418