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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12817199_12817705_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12817199 - 12817705
Intron Length:
507

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAGGCACA
5'SS Class:
strong_major
3'SS Sequence:
TTCTTGTTGCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
CTGTTTTCAATT
Flanking Amino Acid:
VDLDMVVKCLRYFAGWADKF
Intron Amino Acid Position:
52

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1
71.6
40.2
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
77.9
0.63
1
72.5
42.4
Minor 5ss
38.3
-1.3
3.1
49.3
46.7
Minor BPS
57.7
0.32
1.5
70.83
41.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008579
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008975
12816761 - 12823338
6578