Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12819878_12820549_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

12819878 - 12820549

Intron Length:

672

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACA|GTAAGCACC

5'SS Class:

major

3'SS Sequence:

TCCCCCATCTTAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CCCCCAT

U12 Branch Point Sequence:

TCTCCCCCATCT

Flanking Amino Acid:

SPNIIMSDADMDWAVDQAHF

Intron Amino Acid Position:

205

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

70.4

0.48

1.1

63.8

40.9

Major BPS

48.9

-0

1.3

39.1

Major PPT

68.2

0.41

0.8

65.8

28.5

Minor 5ss

42.8

-0.8

2.8

59.3

38.9

Minor BPS

46.9

-0.1

2.1

70.76

45.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000008579

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000008975

12816761 - 12823338

6578