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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12821255_12821578_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12821255 - 12821578
Intron Length:
324

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGACCT
5'SS Class:
strong_major
3'SS Sequence:
TTGGATCTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
ACTTTTTCACTT
Flanking Amino Acid:
QDNMTIAREEIFGPVMQILK
Intron Amino Acid Position:
322

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.8
74.2
36.1
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
76.6
0.6
1
69.8
41.2
Minor 5ss
29.2
-2.4
3.1
40
45.5
Minor BPS
48.3
-0
1.7
65.22
40.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008579
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008975
12816761 - 12823338
6578