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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12821737_12822271_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12821737 - 12822271
Intron Length:
535

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGCCTT
5'SS Class:
major
3'SS Sequence:
CTTTCCTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
AGGTGCTTGATT
Flanking Amino Acid:
VSQALRAGTVWVNCYDVFGA
Intron Amino Acid Position:
374

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
1
70.5
41.3
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
90.3
0.91
0.6
88.3
21.3
Minor 5ss
38.5
-1.3
3.3
53.4
44.8
Minor BPS
55.6
0.26
1.8
69.64
41.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008579
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008975
12816761 - 12823338
6578