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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12822387_12823229_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12822387 - 12823229
Intron Length:
843

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTGAGTATC
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTTCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTGTAAC
U12 Branch Point Sequence:
TGACCTGTAACT
Flanking Amino Acid:
GLEAYVEVKNVTIKIPQKNS
Intron Amino Acid Position:
413

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
0.9
83.4
28
Major BPS
62.2
0.3
1.2
65
38.7
Major PPT
88.2
0.86
0.8
81.3
36.4
Minor 5ss
37.3
-1.4
2.9
50.4
39.3
Minor BPS
55.6
0.25
2
75.14
41.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008579
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008975
12816761 - 12823338
6578