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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12834685_12837292_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12834685 - 12837292
Intron Length:
2608

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CAG|GCAAGTCAC
5'SS Class:
strong_major
3'SS Sequence:
TGCCCTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GATTTAT
U12 Branch Point Sequence:
AGTTCTGTAATT
Flanking Amino Acid:
EKQASQVTKQIALALQHCHS
Intron Amino Acid Position:
28

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.9
1.13
0.7
81.1
36.1
Major BPS
70.9
0.52
1.2
63.7
43.9
Major PPT
82.5
0.73
0.8
80
32
Minor 5ss
24.2
-3
3.7
34.7
41.7
Minor BPS
60.5
0.41
2
78.72
38

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008559
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008907
12834604 - 12846233
11630