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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12837383_12838006_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12837383 - 12838006
Intron Length:
624

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGATTA
5'SS Class:
strong_major
3'SS Sequence:
CTCCTTGTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTATGCTGAAAC
Flanking Amino Acid:
ENLLFKDNSLDAPVKLCDFG
Intron Amino Acid Position:
58

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.84
0.9
79.6
29.4
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
77.6
0.62
0.8
76.1
32.5
Minor 5ss
41.7
-0.9
3.1
53.2
45
Minor BPS
54
0.11
2
69.85
40.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008559
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008907
12834604 - 12846233
11630