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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12841074_12843267_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12841074 - 12843267
Intron Length:
2194

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTGAGTTGA
5'SS Class:
strong_major
3'SS Sequence:
ATTCCTCTCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CAATCAT
U12 Branch Point Sequence:
GCTTTATGGACT
Flanking Amino Acid:
ISEMAKDIVRKLLKVKPEER
Intron Amino Acid Position:
179

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81
0.73
0.9
73.9
33
Major BPS
68.1
0.45
1.1
69.7
35.6
Major PPT
78.3
0.64
0.8
69.8
35.9
Minor 5ss
35.8
-1.6
2.8
40.4
40
Minor BPS
49.6
0.05
1.8
69.42
41.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008559
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008907
12834604 - 12846233
11630