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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12843389_12844041_F

Intron Information:

Intron Rank:
6
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
12843389 - 12844041
Intron Length:
653

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCTAAACA
5'SS Class:
weak_major
3'SS Sequence:
CTTCTCGTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAA
U12 Branch Point Sequence:
TCAACCACAACT
Flanking Amino Acid:
LPSAQLMMDKAMVAGIQQAH
Intron Amino Acid Position:
220

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
59.7
0.23
1.3
60.3
38.3
Major BPS
73.8
0.59
0.9
74
26.8
Major PPT
81.3
0.7
0.8
72.7
37.5
Minor 5ss
34.6
-1.7
2.8
41.9
44.3
Minor BPS
50.9
0.11
1.9
71.42
44.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008559
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008907
12834604 - 12846233
11630