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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12845417_12846138_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12845417 - 12846138
Intron Length:
722

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGGAAC
5'SS Class:
major
3'SS Sequence:
TTTTTCCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTGAC
U12 Branch Point Sequence:
ACCTGCTGACTA
Flanking Amino Acid:
RDTLQSFSWNGRGFTDKVDR
Intron Amino Acid Position:
339

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
0.9
70.9
34.5
Major BPS
66.3
0.4
1.1
57
41.8
Major PPT
94.5
1
0.5
93.1
16
Minor 5ss
27.3
-2.6
3
30.7
36.9
Minor BPS
43.1
-0.5
2
49.7
42.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008559
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008907
12834604 - 12846233
11630