About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12857844_12857957_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12857844 - 12857957
Intron Length:
114

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTAGCAGA
5'SS Class:
major
3'SS Sequence:
TCCCTTTTCACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAC
U12 Branch Point Sequence:
ACCCTTTTGACA
Flanking Amino Acid:
PIAFFCCWAPAVLLGILKLV
Intron Amino Acid Position:
245

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.2
0.64
1.2
70.1
42
Major BPS
86.5
0.91
0.8
77.4
37.4
Major PPT
82.9
0.74
0.7
78.4
27.3
Minor 5ss
35.1
-1.7
2.7
41.2
44.7
Minor BPS
53.8
0.11
1.2
56.77
36.7

Associated Gene:

Gene:
TMEM116
Ensembl Gene ID:
ENSAPLG00000008542
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008881
12857042 - 12867827
10786