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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12858103_12858643_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12858103 - 12858643
Intron Length:
541

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGAAAC
5'SS Class:
strong_major
3'SS Sequence:
TTATTCTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTTAT
U12 Branch Point Sequence:
ATATGCTTATTC
Flanking Amino Acid:
SFLISFVAILVVLVRARGLY
Intron Amino Acid Position:
197

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
0.9
76.9
31.6
Major BPS
76.2
0.65
1.1
65.7
43.2
Major PPT
86.2
0.81
0.7
85.5
28.9
Minor 5ss
33.9
-1.8
2.9
40.8
39.5
Minor BPS
52.3
0.05
2
65.44
40.5

Associated Gene:

Gene:
TMEM116
Ensembl Gene ID:
ENSAPLG00000008542
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008881
12857042 - 12867827
10786