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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12858783_12858865_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12858783 - 12858865
Intron Length:
83

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAAGCTTC
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCCCCGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACGGCAA
U12 Branch Point Sequence:
ACGGCAAGAGCT
Flanking Amino Acid:
NCYQNFSQKHGCLLMHTEAA
Intron Amino Acid Position:
150

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.3
0.74
1
73.2
39.3
Major BPS
41.8
-0.5
1.3
43
39.5
Major PPT
82.5
0.73
0.7
77.7
24.2
Minor 5ss
48
-0.2
2.8
59.7
45.1
Minor BPS
36.8
-0.9
2
49.46
43.4

Associated Gene:

Gene:
TMEM116
Ensembl Gene ID:
ENSAPLG00000008542
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008881
12857042 - 12867827
10786