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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12858950_12859359_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12858950 - 12859359
Intron Length:
410

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGATTT
5'SS Class:
strong_major
3'SS Sequence:
TCTCTCCTCCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGCAAT
U12 Branch Point Sequence:
AATACAGTAACT
Flanking Amino Acid:
CIGRAATILSSLVPFLLMVP
Intron Amino Acid Position:
122

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.2
1.04
0.7
90.6
21.2
Major BPS
61.8
0.29
1.4
70.7
42.6
Major PPT
80.9
0.7
0.7
72.9
31.9
Minor 5ss
43.9
-0.7
3.2
64.8
46.5
Minor BPS
49.4
0.03
2.3
74.08
41.9

Associated Gene:

Gene:
TMEM116
Ensembl Gene ID:
ENSAPLG00000008542
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008881
12857042 - 12867827
10786