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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12859410_12860883_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12859410 - 12860883
Intron Length:
1474

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGTAGG
5'SS Class:
strong_major
3'SS Sequence:
TTGGACTTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
AATCATTTAATT
Flanking Amino Acid:
NQSLNRMPPTVVDYVSCIGR
Intron Amino Acid Position:
106

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.3
0.74
1
69.1
43.2
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
76.5
0.6
1
69.6
41.2
Minor 5ss
30.2
-2.3
2.6
34.3
41.4
Minor BPS
61.6
0.44
1.4
74.27
36.1

Associated Gene:

Gene:
TMEM116
Ensembl Gene ID:
ENSAPLG00000008542
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008881
12857042 - 12867827
10786