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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12867676_12867813_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12867676 - 12867813
Intron Length:
138

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCGGCT
5'SS Class:
major
3'SS Sequence:
TTTGTTTTGTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCCAAC
U12 Branch Point Sequence:
CCCGTGCCAACG
Flanking Amino Acid:
MAMLSVTGSSSIIA
Intron Amino Acid Position:
5

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.9
0.4
1.2
62.3
41.3
Major BPS
48.7
-0
1.3
56.4
38.8
Major PPT
83.6
0.76
0.9
84.6
36
Minor 5ss
36.3
-1.5
3.8
56.7
47.5
Minor BPS
32.8
-1.4
2.2
30.59
41.8

Associated Gene:

Gene:
TMEM116
Ensembl Gene ID:
ENSAPLG00000008542
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008881
12857042 - 12867827
10786