About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12870367_12871521_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12870367 - 12871521
Intron Length:
1155

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGAGC
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCTTGACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTAATAT
U12 Branch Point Sequence:
TTTCTCTTGACA
Flanking Amino Acid:
DLLVAEVGISDYGDKLNTDL
Intron Amino Acid Position:
95

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.2
0.83
0.9
73
38.2
Major BPS
55.2
0.13
1.2
53
41.2
Major PPT
82.7
0.74
0.9
79.9
32.1
Minor 5ss
27.2
-2.6
3
33.9
41.8
Minor BPS
77.4
0.86
1.1
83.73
29.3

Associated Gene:

Gene:
ERP29
Ensembl Gene ID:
ENSAPLG00000008539
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008868
12869864 - 12873561
3698