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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12871661_12873417_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12871661 - 12873417
Intron Length:
1757

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACCGCCG
5'SS Class:
major
3'SS Sequence:
TTTCTTATTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TTTTTCTTATTT
Flanking Amino Acid:
VPLDSLTFYKVIPKHKFVLV
Intron Amino Acid Position:
49

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.3
0.31
1.3
49
47.1
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
86.5
0.82
0.7
86
26.8
Minor 5ss
35.5
-1.6
3.4
48.5
47.2
Minor BPS
75.8
0.89
1.5
91.23
32.5

Associated Gene:

Gene:
ERP29
Ensembl Gene ID:
ENSAPLG00000008539
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008868
12869864 - 12873561
3698