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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12890856_12891626_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12890856 - 12891626
Intron Length:
771

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTTTG
5'SS Class:
strong_major
3'SS Sequence:
TCTTTATCCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTATCTTTATCC
Flanking Amino Acid:
HLLLDLWLEEGEETAVWQCL
Intron Amino Acid Position:
483

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.6
0.91
0.8
80.5
35
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
81.3
0.7
0.8
73.7
35.8
Minor 5ss
49.9
-0
2.4
66.4
45.1
Minor BPS
71.3
0.65
1.5
79.09
36.3

Associated Gene:

Gene:
NAA25
Ensembl Gene ID:
ENSAPLG00000008475
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008865
12889127 - 12906786
17660