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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12891717_12892528_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12891717 - 12892528
Intron Length:
812

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTGAGGAAA
5'SS Class:
major
3'SS Sequence:
TTTTTCTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
AACTATGCAACT
Flanking Amino Acid:
MLRYRHGLEFGKTCLKTELQ
Intron Amino Acid Position:
453

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
71.3
35.7
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
93
0.97
0.5
93
16.2
Minor 5ss
26.6
-2.7
3
31.2
42.7
Minor BPS
43
-0.4
2.2
60.61
42.9

Associated Gene:

Gene:
NAA25
Ensembl Gene ID:
ENSAPLG00000008475
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008865
12889127 - 12906786
17660