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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12892737_12894491_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12892737 - 12894491
Intron Length:
1755

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
GTTTCTCTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAC
U12 Branch Point Sequence:
TAAAATTTAACA
Flanking Amino Acid:
DLLPSSQYTKFISQLLEVIP
Intron Amino Acid Position:
384

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
86
23.6
Major BPS
80.9
0.77
0.8
81.7
25.4
Major PPT
85.9
0.81
0.8
77.4
36.9
Minor 5ss
36.8
-1.5
2.7
42.6
38.4
Minor BPS
60.6
0.33
1.5
67.62
38

Associated Gene:

Gene:
NAA25
Ensembl Gene ID:
ENSAPLG00000008475
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008865
12889127 - 12906786
17660