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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12894605_12895380_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12894605 - 12895380
Intron Length:
776

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGAGCC
5'SS Class:
strong_major
3'SS Sequence:
GCCTTTTTCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
AGCATATTAAAA
Flanking Amino Acid:
CRGCNDEYKLGDPEELMFQY
Intron Amino Acid Position:
346

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.1
0.95
0.8
76
31.7
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
75.2
0.57
0.8
68.4
37.4
Minor 5ss
31.7
-2.1
3.3
42.5
44.5
Minor BPS
47.1
-0.2
1.7
53.71
37.8

Associated Gene:

Gene:
NAA25
Ensembl Gene ID:
ENSAPLG00000008475
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008865
12889127 - 12906786
17660