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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12896002_12897176_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12896002 - 12897176
Intron Length:
1175

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGATGA
5'SS Class:
major
3'SS Sequence:
CTTTTTGTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCCTAAA
U12 Branch Point Sequence:
TTCCCTAAACTT
Flanking Amino Acid:
NALSRRLLLKNSDDWQFYIT
Intron Amino Acid Position:
259

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.1
0.62
1
67.6
34
Major BPS
60.4
0.26
1.1
61.5
32.5
Major PPT
89.4
0.89
0.8
88
29.4
Minor 5ss
33.6
-1.9
3.1
38.5
40.9
Minor BPS
42.3
-0.5
2
61.41
43.2

Associated Gene:

Gene:
NAA25
Ensembl Gene ID:
ENSAPLG00000008475
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008865
12889127 - 12906786
17660