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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12897794_12898222_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12897794 - 12898222
Intron Length:
429

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGACAT
5'SS Class:
strong_major
3'SS Sequence:
GCTTTCTTTTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
ATTTGTTTCACT
Flanking Amino Acid:
KEDKIEAEAEVELYYMILER
Intron Amino Acid Position:
196

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
74.4
35.9
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
75.4
0.57
1
79.1
33.3
Minor 5ss
35.3
-1.7
3.3
48.7
41.3
Minor BPS
57.5
0.32
2.2
81.74
40.3

Associated Gene:

Gene:
NAA25
Ensembl Gene ID:
ENSAPLG00000008475
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008865
12889127 - 12906786
17660