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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12898331_12899096_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12898331 - 12899096
Intron Length:
766

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGTGTACA
5'SS Class:
strong_major
3'SS Sequence:
TTCCTCCCTTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CAGTAAT
U12 Branch Point Sequence:
GTTACAGTAATT
Flanking Amino Acid:
FWSVMSLIMQSISAQDENLS
Intron Amino Acid Position:
160

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.7
0.82
0.8
78.5
30.2
Major BPS
64.3
0.36
1.2
65.3
38.6
Major PPT
79.7
0.67
0.7
78
24
Minor 5ss
36.7
-1.5
2.5
43
44
Minor BPS
49.2
0.02
2.3
74.87
41.7

Associated Gene:

Gene:
NAA25
Ensembl Gene ID:
ENSAPLG00000008475
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008865
12889127 - 12906786
17660