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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12902951_12903863_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12902951 - 12903863
Intron Length:
913

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCGGG
5'SS Class:
strong_major
3'SS Sequence:
GTTGTATCAATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTAAC
U12 Branch Point Sequence:
GTGTTCCTAACA
Flanking Amino Acid:
KKHKDLHCAKVLKAIGLQRT
Intron Amino Acid Position:
49

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.5
0.86
0.9
67.1
44.6
Major BPS
72
0.55
1
71.8
31.4
Major PPT
65
0.34
1
59.8
40.8
Minor 5ss
35.7
-1.6
3.3
46.8
48.5
Minor BPS
63.3
0.41
1.7
72.56
39.2

Associated Gene:

Gene:
NAA25
Ensembl Gene ID:
ENSAPLG00000008475
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008865
12889127 - 12906786
17660