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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12903950_12906728_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12903950 - 12906728
Intron Length:
2779

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTACGGGCC
5'SS Class:
major
3'SS Sequence:
TCTTCTTACGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTAAT
U12 Branch Point Sequence:
TTCTTCTTACGC
Flanking Amino Acid:
PNDRRLRPIYDYLDNGNNKM
Intron Amino Acid Position:
20

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.8
0.47
1.1
60.6
40.1
Major BPS
84.4
0.85
1.1
84
34.5
Major PPT
80.3
0.68
0.8
76.8
30.6
Minor 5ss
29.9
-2.3
3.7
42.2
44.8
Minor BPS
56.1
0.17
1.9
69.02
43.1

Associated Gene:

Gene:
NAA25
Ensembl Gene ID:
ENSAPLG00000008475
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008865
12889127 - 12906786
17660