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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12910913_12911953_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12910913 - 12911953
Intron Length:
1041

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGAAAC
5'SS Class:
strong_major
3'SS Sequence:
ATTCTTCTTGTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TTTTTTTGAAAC
Flanking Amino Acid:
PEGETRLCGNCKKDIPVPNF
Intron Amino Acid Position:
17

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
0.9
76.9
31.6
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
82.6
0.73
0.7
78
30
Minor 5ss
33.9
-1.8
2.9
40.8
39.5
Minor BPS
64.6
0.44
1.5
76.07
33.6

Associated Gene:

Gene:
TRAFD1
Ensembl Gene ID:
ENSAPLG00000008457
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008779
12910863 - 12918776
7914
ENSAPLT00000001638
12910863 - 12919049
8187