Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_1291105_1333277_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1291105 - 1333277

Intron Length:

42173

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAGGCTG

5'SS Class:

strong_major

3'SS Sequence:

TTGTTCCTCCTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATCTAAA

U12 Branch Point Sequence:

TTGTATCTAAAA

Flanking Amino Acid:

KNSTEDQFTLRAKVKKGVNI

Intron Amino Acid Position:

323

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.5

0.91

0.9

73.4

43.3

Major BPS

76.5

0.66

0.8

75.9

24.9

Major PPT

77.1

0.61

0.8

70.3

36.4

Minor 5ss

34.4

-1.8

3.4

46.7

48.6

Minor BPS

49.3

-0

1.9

66.39

39.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000012171

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000024447

1144737 - 1372582

227846

ENSAPLT00000037047

1144737 - 1430941

286205

ENSAPLT00000022168

1144737 - 1395385

250649

ENSAPLT00000034307

1144737 - 1430941

286205

ENSAPLT00000012672

1144737 - 1397561

252825

ENSAPLT00000028392

1144737 - 1351737

207001

ENSAPLT00000048397

1144737 - 1434770

290034

ENSAPLT00000027628

1144737 - 1367322

222586

ENSAPLT00000040969

1144737 - 1367322

222586