Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12912090_12912162_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

12912090 - 12912162

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGATGAGC

5'SS Class:

major

3'SS Sequence:

CTGTTTATTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TGTTTAT

U12 Branch Point Sequence:

GTTAATGTAATG

Flanking Amino Acid:

KNHIESEHVQVTCKCSMKVE

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

74.9

0.59

65.8

39.9

Major BPS

81.3

0.78

1.1

71.7

44.6

Major PPT

82.6

0.73

0.9

77.5

35.5

Minor 5ss

27.2

-2.6

34.5

41.4

Minor BPS

44.8

-0.5

2.2

53.54

41.7

Associated Gene:

Gene:

TRAFD1

Ensembl Gene ID:

ENSAPLG00000008457

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000008779

12910863 - 12918776

7914

ENSAPLT00000001638

12910863 - 12919049

8187