Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12913626_12914936_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

12913626 - 12914936

Intron Length:

1311

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGGTGT

5'SS Class:

strong_major

3'SS Sequence:

TTATATTTTGAAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TATTTAT

U12 Branch Point Sequence:

TTCTCTAAAATT

Flanking Amino Acid:

VSAVQRSQSQEHELEQWERN

Intron Amino Acid Position:

219

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

90.2

0.95

0.8

79.5

36.8

Major BPS

88.7

0.96

0.8

36.5

Major PPT

74.5

0.55

1.1

75.7

37.9

Minor 5ss

38.5

-1.3

3.4

55.9

48.3

Minor BPS

53.7

0.19

1.9

76.08

41.4

Associated Gene:

Gene:

TRAFD1

Ensembl Gene ID:

ENSAPLG00000008457

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000008779

12910863 - 12918776

7914

ENSAPLT00000001638

12910863 - 12919049

8187