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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12918636_12919004_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12918636 - 12919004
Intron Length:
369

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGCAG
5'SS Class:
strong_major
3'SS Sequence:
ACCTCTCCTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTTTTTTCACC
Flanking Amino Acid:
PGGLRSRNVKAKPQSPEFGY
Intron Amino Acid Position:
575

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.9
69.6
42.7
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
73
0.52
0.8
70.2
30
Minor 5ss
30.1
-2.3
3.2
37.6
47.1
Minor BPS
69.1
0.58
1.7
81.25
33.5

Associated Gene:

Gene:
TRAFD1
Ensembl Gene ID:
ENSAPLG00000008457
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001638
12910863 - 12919049
8187