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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12924295_12924754_R

Intron Information:

Intron Rank:
75
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12924295 - 12924754
Intron Length:
460

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGTGTTTG
5'SS Class:
strong_major
3'SS Sequence:
CCTTTCCCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAA
U12 Branch Point Sequence:
ATGTATTCAACC
Flanking Amino Acid:
MKIAPPDGAAGSPDSRYIRV
Intron Amino Acid Position:
4379

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
0.9
76.6
35
Major BPS
83
0.82
0.8
83.9
25.3
Major PPT
83.1
0.74
0.7
77.2
24.8
Minor 5ss
44.5
-0.6
2.7
57.3
47.4
Minor BPS
54.9
0.13
1.7
66.06
39.4

Associated Gene:

Gene:
HECTD4
Ensembl Gene ID:
ENSAPLG00000015991
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016725
12924158 - 12990491
66334