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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12924978_12925776_R

Intron Information:

Intron Rank:
74
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12924978 - 12925776
Intron Length:
799

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGAGGA
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTCTGTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAGAAAA
U12 Branch Point Sequence:
CAGTGGATATTT
Flanking Amino Acid:
LPYINLEFLKAHTMYQVGLM
Intron Amino Acid Position:
4305

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
0.9
67.8
37.5
Major BPS
46.6
-0.2
1
49
32
Major PPT
79.6
0.67
0.9
81.2
30.8
Minor 5ss
35.9
-1.6
3.3
47.3
48.1
Minor BPS
34.7
-1
2.4
49.15
44.6

Associated Gene:

Gene:
HECTD4
Ensembl Gene ID:
ENSAPLG00000015991
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016725
12924158 - 12990491
66334