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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12925973_12926448_R

Intron Information:

Intron Rank:
73
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12925973 - 12926448
Intron Length:
476

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGAGTAAC
5'SS Class:
strong_major
3'SS Sequence:
TCTGCCCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTGAA
U12 Branch Point Sequence:
TTGTCTTGAATC
Flanking Amino Acid:
LCPRGRHVPVGWENKDVYAT
Intron Amino Acid Position:
4239

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
0.9
77.5
32.9
Major BPS
74.6
0.61
1
65.6
41.4
Major PPT
80
0.68
0.8
73.3
31.6
Minor 5ss
30.1
-2.3
2.6
28.4
36
Minor BPS
68.9
0.57
1.4
74.87
36.1

Associated Gene:

Gene:
HECTD4
Ensembl Gene ID:
ENSAPLG00000015991
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016725
12924158 - 12990491
66334