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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12927656_12928480_R

Intron Information:

Intron Rank:
70
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12927656 - 12928480
Intron Length:
825

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTCAG
5'SS Class:
strong_major
3'SS Sequence:
CTCTCTCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTCAT
U12 Branch Point Sequence:
ACTTCATTATTT
Flanking Amino Acid:
RFTGEEVHGTSGSFRHFLWQ
Intron Amino Acid Position:
4075

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
1
71.6
40.1
Major BPS
78.6
0.71
1
79.6
32.9
Major PPT
85.4
0.8
0.7
80.1
25.2
Minor 5ss
35.3
-1.7
2.9
41.6
39
Minor BPS
57.5
0.31
1.9
75.4
41.6

Associated Gene:

Gene:
HECTD4
Ensembl Gene ID:
ENSAPLG00000015991
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016725
12924158 - 12990491
66334