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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12928637_12928772_R

Intron Information:

Intron Rank:
69
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12928637 - 12928772
Intron Length:
136

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGGAA
5'SS Class:
strong_major
3'SS Sequence:
TATTTTTCAACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TATTTTTCAACA
Flanking Amino Acid:
ITLDPLEIVGGEIRSSENSY
Intron Amino Acid Position:
4023

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
78.3
31.1
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
81.4
0.71
0.9
78
34.9
Minor 5ss
28.5
-2.5
3.5
37.1
47.5
Minor BPS
67.8
0.55
1.4
76.36
34.5

Associated Gene:

Gene:
HECTD4
Ensembl Gene ID:
ENSAPLG00000015991
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016725
12924158 - 12990491
66334